Estimate the library size parameters for the Kersplat simulation
Usage
kersplatEstLib(counts, params, verbose)
Arguments
- counts
counts matrix.
- params
KersplatParams object to store estimated values in.
- verbose
logical. Whether to print progress messages
Value
KersplatParams object with library size parameters
Details
Parameters for the log-normal distribution are estimated by fitting the
library sizes using fitdist. All the fitting
methods are tried and the fit with the best Cramer-von Mises statistic is
selected. The density of the library sizes is also estimated using
density.