Simulate Kersplat final counts

Simulate the final counts matrix for a Kersplat simulation

Usage

kersplatSimCounts(sim, params, verbose)

Arguments

sim

SingleCellExperiment containing simulation.

params

KersplatParams object with simulation parameters.

verbose

logical. Whether to print progress messages

Value

SingleCellExperiment with counts matrix

Details

The cell counts matrix and ambient counts matrix are added together. The result is then downsampled to the cell library size (for cells and doublets) or the ambient library size (for empty cells) using the downsampleMatrix function.

See also

downsampleMatrix