Generate set of "empirical" mock data

Quick function to generate matching mock VCF, bulk expression, and eQTL data, useful for running splatPopEmpiricalMeans

Usage

mockEmpiricalSet(
  n.genes = 20,
  n.snps = 1000,
  n.samples = 10,
  chromosome = 1,
  chr.length = 2e+06,
  seed = NULL
)

Arguments

n.genes

Number of genes in mock eQTL data.

n.snps

Number of SNPs in mock vcf file.

n.samples

Number of samples in mock bulk data.

chromosome

Chromosome name

chr.length

Length of mock chromosome

seed

Optional: seed for random seed

Value

list(gff=mockGFF, vcf=mockVCF, means=mockMEANS, eqtl=mockEQTL)

Examples

empirical <- mockEmpiricalSet()