Quick function to generate matching mock VCF, bulk expression, and eQTL data,
useful for running splatPopEmpiricalMeans
Usage
mockEmpiricalSet(
n.genes = 20,
n.snps = 1000,
n.samples = 10,
chromosome = 1,
chr.length = 2e+06,
seed = NULL
)
Arguments
- n.genes
Number of genes in mock eQTL data.
- n.snps
Number of SNPs in mock vcf file.
- n.samples
Number of samples in mock bulk data.
- chromosome
Chromosome name
- chr.length
Length of mock chromosome
- seed
Optional: seed for random seed
Value
list(gff=mockGFF, vcf=mockVCF, means=mockMEANS, eqtl=mockEQTL)
Examples
empirical <- mockEmpiricalSet()