Last updated: 2026-01-07

Checks: 1 1

Knit directory: public_barcode_count/

This reproducible R Markdown analysis was created with workflowr (version 1.7.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Repository version: f48add2

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version f48add2. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .RData
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    public_barcode_count.Rproj

Untracked files:
    Untracked:  README.html

Unstaged changes:
    Modified:   README.md
    Modified:   analysis/about.Rmd
    Modified:   analysis/index.Rmd
    Modified:   output/fs1_mixture.png
    Modified:   output/mixture_barbieQ.rda

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/about.Rmd) and HTML (docs/about.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html f48add2 FeiLiyang 2026-01-07 supple analyses
Rmd c2766f9 Liyang Fei 2025-10-07 remake figures
html 6b0ff60 Liyang Fei 2025-05-14 customize wflow
Rmd 88e2a58 Liyang Fei 2025-05-14 add analysis/
Rmd e3acf90 feiliyang 2025-01-14 initalize WuC analysis
html e3acf90 feiliyang 2025-01-14 initalize WuC analysis
Rmd 9ec2763 feiliyang 2025-01-12 Start workflowr project.

Author: “Liyang Fei”

Last update: 2026 Jan.

This repository hosts the analysis of several public barcode count datasets using the barbieQ package.

Files in the *filtered branch are in line with the analyses in the barbieQ paper.